The role of microbiotes in the etiology of inflammatory intestinal diseases
Abstract
Inflammatory bowel disease is a chronic inflammatory process, with etiology not yet well established, of multifactorial nature, represented mainly by two phenotypes, ulcerative colitis (UC) and Crohn's disease (CD). About pathogenesis, it is believed that direct and indirect homeostasis between microbiota, intestinal epithelium and immune cells is disrupted by genetic and environmental factors such as antibiotic use, smoking, diets and stress, resulting in a poor state. chronic unregulated inflammation. Recent scientific evidence has shown that the human gut microbiota can produce antigenic factors that trigger persistent inflammation of the intestinal mucosa as observed in CD and UC. In the last two decades, with the advent of new "ômicas" technologies, there has been an expansion of possibilities to analyze in large proportion the genetic and metabolic profile of the intestinal microbial population, which is numerically the most representative in the human body. Thus, there was an exponential expansion of the understanding of the composition as well as the functions performed by the gut microbiome, which enabled the discovery of new horizons regarding mechanisms of action triggering the inflammatory processes of many chronic diseases with inflammatory bowel diseases, allowing the formulation and implementation of new therapeutic interventions.
References
-Aggeletopoulou, I.; Konstantakis, C.; Assimakopoulos, S. F.; Triantos, C. The role of the gut microbiota in the treatment of inflammatory bowel diseases. Microbial Pathogenesis. Vol. 137. 2019. p. 103774.
-Akram, W.; Garud, N.; Joshi, R. Role of inulin as prebiotics on inflammatory bowel disease Drug Discoveries & Therapeutics. Vol. 13. Num. 1. 2019. p. 1-8.
-Albenberg, L. G.; Wu, G. D. Diet and the intestinal microbiome: associations, functions, and implications for health and disease. Gastroenterology. Vol. 146. 2014. p. 1564–1572.
-Ananthakrishnan, A.N. Epidemiology and risk factors for IBD. Nat Rev Gastroenterol Hepatol. Vol. 12. 2015. p. 205-17.
-Andoh, A.; Kuzuoka, H.; Tsujikawa, T. Nakamura, S.; Hirai, F.; Suzuki ,Y.; Matsui, T.; Fujiyama, Y.; Matsumoto, T. Multicenter analysis of fecal microbiota profiles in Japanese patients with Crohn’s disease. J Gastroenterol. Vol. 47. 2012. p. 1298-307.
-Arumugam, M.; Raes, J.; Pelletier, E.; Le Paslier, D.; Yamada, T.; Mende, D.R.; Fernandes, G.R.; Tap, J.; Bruls, T.; Batto, J.M.; Bertalan, M.; Borruel, N.; Casellas, F.; Fernandez, L.; Gautier, L.; Hansen, T.; Hattori, M.; Hayashi, T.; Kleerebezem, M.; Kurokawa, K.; Leclerc, M.; Levenez, F.; Manichanh, C.; Nielsen, H.B.; Nielsen, T.; Pons, N.; Poulain, J.; Qin, J.; Sicheritz-Ponten, T.; Tims, S.; Torrents, D.; Ugarte, E.; Zoetendal, E.G.; Wang, J.; Guarner, F.; Pedersen, O.; de Vos, W.M.; Brunak, S.; Doré, J.; MetaHIT, Consortium.; Antolín, M.; Artiguenave, F.; Blottiere, H.M.; Almeida, M.; Brechot, C.; Cara, C.; Chervaux, C.; Cultrone, A.; Delorme, C.; Denariaz, G.; Dervyn, R.; Foerstner, K.U.; Friss, C.; Van de Guchte, M.; Guedon, E.; Haimet, F.; Huber, W.; Van Hylckama-Vlieg, J.; Jamet, A.; Juste, C.; Kaci, G.; Knol, J.; Lakhdari, O.; Layec, S.; Le Roux, K.; Maguin, E.; Mérieux, A.; Melo Minardi, R.; M'rini C.; Muller J.; Oozeer R.; Parkhill J.; Renault P.; Rescigno M.; Sanchez N.; Sunagawa S.; Torrejon A.; Turner K.; Vandemeulebrouck G.; Varela E.; Winogradsky Y.; Zeller G.; Weissenbach J.; Ehrlich, S.D.; Bork, P. Enterotypes of the human gut microbiome. Nature. Vol. 473. Num. 7346. 2011. p. 174-180.
-Backhed, F.; Roswall, J.; Peng, Y.; Feng, Q.; Jia, H.; Kovatcheva-Datchary, P.; Li, Y.; Xia, Y.; Xie, H.; Zhong, H.; Khan, M.T.; Zhang, J.; Li, J.; Xiao, L.; Al-Aama, J.; Zhang, D.; Lee, Y.S.; Kotowska, D.; Colding, C.; Tremaroli, V.; Yin, Y.; Bergman, S.; Xu, X.; Madsen, L.; Kristiansen, K.; Dahlgren, J.; Wang, J. Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life. Cell Host Microbe. Vol. 17. 2015. p. 852.
-Barnich, N.; Denizot, J.; Darfeuille-Michaud, A. E. coli-mediated gut inflammation in genetically predisposed Crohn’s disease patients. Pathol Biol. Vol. 61. 2013. p. 65-69.
-Basson, A. Nutrition management in the adult patient with Crohn’s disease. S Afr J Clin Nutr. Vol. 25. 2012. p. 164-172.
-Bernstein, C.N.; Forbes, J.D. Gut Microbiome in Inflammatory Bowel Disease and Other Chronic Immune-Mediated Inflammatory Diseases. Inflammatory Intestinal Diseases. Vol. 2. 2017. p. 16-23.
-Brenchley, J.M.; Douek, D.C. Microbial translocation across the GI tract. Annu Rev Immunol. Vol. 30. 2012. p. 149-73.
-Brown, E.M.; Sadarangani, M.; Finlay, B.B. The role of the immune system in governing host-microbe interactions in the intestine. Nat Immunol. Vol. 14. 2013. p. 660-667.
-Byrne, C.; Chambers, E.; Morrison, D.; Frost, G. The role of short chain fatty acids in appetite regulation and energy homeostasis. Int J Obes. Vol. 39. Num. 9. 2015. p. 1331-8.
-Celiberto, L.S.; Graef, F.A.; Healey, G.R.; Bosman, E.S.; Jacobson, K.; Sly, L.M.; Vallance, B.A. Inflammatory bowel disease and immunonutrition: novel therapeutic approaches through modulation of diet and the gut microbiome. Immunology. Vol. 155. 2018. p. 36-52.
-Chang, C.; Lin, H. Dysbiosis in gastrointestinal disorders. Best Pract Res Clin Gastroenterol. Vol. 30. 2016. p. 3-15.
-Chassaing, B.; Gewirtz, A.T. Pathobiont hypnotises enterocytes to promote tumour development. Gut. Vol. 63. Num.12. p. 1837-8.
-Cheifetz, A.S.; Gianotti, R.; Luber, R.; Gibson, P.R. Complementary and alternative medicines used by patients with inflammatory bowel diseases. Gastroenterology. Vol. 152. 2017. p 415-29.
-Chen, L.; Wang, W.; Zhou, R.; Ng, S.C.; Li, J.; Huang, M.; Zhou, F.; Wang, X.; Shen, B.; Kamm, M.; Wu, K.; Xia, B. Characteristics of fecal and mucosa-associated microbiota in Chinese patients with inflammatory bowel disease. Medicine. Vol. 93. Num. 8. 2014. p. 51.
-Chua, H.H.; Chou, H.C.;Tung, Y.L.; Chiang, B.L.; Liao, C.C.; Liu, H.H.; Ni, Y.H. Intestinal Dysbiosis Featuring Abundance of Ruminococcus gnavus Associates with Allergic Diseases in Infants. Gastroenterology. Vol. 154. Num. 1. 2018. p. 154-67.
-Clemente, J.C.; Ursell, L.K.; Parfrey, L.W.; Knight, R.The impact of the gut microbiota on human health: an integrative view. Cell. Vol. 148. Num. 6. 2013. p. 1258-1270.
-Dahlhamer, J.M.; Zammetti, E.P.; Ward, B.W.; Wheaton, A.G.; Croft, J.B.Prevalence of inflammatory bowel disease among adults aged-18 years, United States, 2015. MMWR Morb Mortal Wkly Rep. Vol. 65. 2016. p. 1166-1169.
-DeGruttola, A.K.; Low, D.; Mizoguchi, A.; Mizoguchi, E. Current understanding of dysbiosis in disease inhuman and animal models. Inflamm Bowel Dis. Vol. 22. Num 5. 2016. p. 1137.
-Den Besten, G.; Van Eunen, K.; Groen, A.K.; Venema, K.; Reijngoud, D.J.; Bakker, B.M. The role of short-chain fatty acids in the interplay between diet, gut microbiota, and hostenergy metabolism. J lipid Res. Vol. 54. Num. 9. 2013. p. 2325-40.
-Dethlefsen, L.; Relman, D.A. Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation. Proc Natl Acad Sci U S A. Vol. 108. Suppl 1. 2011. p. 4554-61.
-Duranti, S.; Gaiani, F.; Mancabelli, L.; Milani, C.; Grandi, A.; Bolchi, A.; Santoni, A.; Lugli, G.A.; Ferrario, C.; Mangifesta, M.; et al. Elucidating the gut microbiome of ulcerative colitis: Bifidobacteria as novel microbial biomarkers. FEMS Microbiol. Ecol. Vol. 92. 2016. p. 1-12.
-Eckburg, P.B.; Bik, E.M.; Bernstein, C.N.; Purdom, E.; Dethlefsen, L.; Sargent, M.; Gill, S.R.; Nelson, K.E.; Relman, D.A. Diversity of the human intestinal microbial flora. Science. Vol. 308. 2005. p. 1635-1638.
-Erickson, A.R.; Cantarel, B.L.; Lamendella, R.; Darzi, Y.; Mongodin, E.F.; Pan, C.; Shah, M.; Halfvarson, J.; Tysk, C.; Henrissat, B; Raes, J.; Verberkmoes, N.C.; Fraser, C.M.; Hettich, R.L.; Jansson, J.K. Integrated metagenomics/ metaproteomics reveals human host-microbiota signatures of Crohn’s disease. PLoS ONE. Vol. 7. 2012. p. 49138.
-Forbes, J.D.; Chen, C.; Knox, N.C. A comparative study of the gut microbiota in immune-mediated inflammatory diseases-does a common dysbiosis exist?. Microbiome. Vol. 6. 2018. p. 221.
-Fukuda, S.; Toh, H.; Hase, K.; Oshima, K.; Nakanishi, Y.; Yoshimura, K.; Tobe, T.; Clarke, J.M.; Topping, D.L.; Suzuki, T.; Taylor, T.D.; Itoh, K.; Kikuchi, J.; Morita, H.; Hattori, M.; Ohno, H.Bifidobacteria can protect from
enteropathogenic infection through production of acetate. Nature. Vol. 469. 2011. p. 543-547.
-Fyderek, K.; Strus, M.; Kowalska-Duplaga, K.; Gosiewski, T.; Wedrychowicz, A.; Jedynak-Wasowicz, U.; Sładek, M.; Pieczarkowski, S.; Adamski, P.; Kochan, P.; Heczko, P.B. Mucosal bacterial microflora and mucus layer thickness in adolescents with inflammatory bowel disease. World J Gastroenterol. Vol. 15. 2009. p. 5287-94.
-Gevers, D.; Kugathasan, S.; Denson, L.A.; Vazquez-Baeza, Y.; Van Treuren, W.; Ren, B.; Schwager, E.; Knights, D.; Song, S.J.; Yassour, M.; Morgan, X.C.; Kostic, A.D.; Luo, C.; González, A.; McDonald, D. Haberman, Y.; Walters, T.; Baker, S.; Rosh, J.; Stephens, M.; Heyman, M.; Markowitz, J.; Baldassano, R.; Griffiths, A.; Sylvester, F.; Mack, D.;Kim,S.; Crandall, W.; Hyams, J.; Huttenhower, C.; Knight, R.; Xavier, R.J. The treatment-naive microbiome in new-onset Crohn’s disease. Cell Host Microbe. Vol. 15. 2014. p. 382-392.
-Gibson, P.R. Overview of inflammatory bowel disease in Australia in the last 50 years. J Gastroenterol Hepatol. Vol. 24. Suppl 3. 2009. p. 63-8.
-Gradel, K.O.; Nielsen, H.L.; Schonheyder, H.C.; Ejlertsen, T.; Kristensen, B.; Nielsen, H. Increased short-and long-term risk of inflammatory bowel disease after salmonella or campylobacter gastroenteritis. Gastroenterology. Vol. 137. 2009. p. 495-501.
-Guslandi, M. Saccharomyces Boulardii Plus Rifaximin in Mesalamine-intolerant Ulcerative Colitis. J. Clin Gastroenterol. Vol. 44. Num. 5. 2010. p. 385.
-Halfvarson, J.; Brislawn, C.J.; Lamendella, R.; Vázquez-baeza, Y.; Walters, W.A.; Bramer, L.M.; Amato, M.D.; Bon, F.; Mcdonald, D.; Gonzalez, A.; Mcclure, E.E.; Dunklebarger, M.F. Dynamics of the human gut microbiome in inflammatory bowel disease. Nat microbiol. Vol.17004. 2017. p. 1-7.
-Han, D.S. Current status and prospects of intestinal microbiome studies. Intest Res. Vol. 12. 2014. p. 178-183.
-Harley, I.T.W.; Karp, C.L. Obesity and the gut microbiome: striving for causality. Mol Metab. Vol. 1. Num. 1-2. 2012. p. 21-31.
-Hevia, A.; Delgado, S.; Sánchez, B.; Margolles, A. Molecular players involved in the interaction between beneficial bacteria and the immune system. Front Microbiol. Vol. 6. 2015. p. 1285.
-Heinken, A.; Sahoo, S.; Fleming, R. M.; T. & Thiele, I. Systems-level characterization of a hostmicrobe metabolic symbiosis in the mammalian gut. Gut Microbes. Vol. 4. 2013. p. 28-40.
-Hill, C.; Guarner, F.; Reid, G.; Gibson, G.R.; Merenstein, D.J.; Pot, B.; Morelli, L.; Canani, R.B.; Flint, H.J.; Salminen, S.; Calder, P.C.; Sanders, M.E. Expert consensus document.The International Scientific Association for Probiotics and Prebiotics consensus statement on the scope and appropriate use of the term probiotic. Nat Rev Gastroenterol Hepatol. Vol. 11. 2014. p. 506-14.
-Hirano, A.; Umeno, J.; Okamoto, Y.; Shibata, H.; Ogura, Y.; Moriyama, T.; Torisu, T.; Fujioka, S.; Fuyuno, Y.; Kawarabayasi, Y.; Matsumoto, T.; Kitazono, T.; Esaki, M.A comparison of the microbial community structure between inflamed and non-inflamed sites in patients with ulcerative colitis. J. Gastroenterol. Hepatol. Vol. 33. Num. 9. 2018. p. 1590-1597.
-Howarth, G.S.; Wang, H. Role of endogenous microbiota, probiotics and their biological products in human health. Nutrients. Vol. 5. 2013. p. 58-81.
-Iannitti, T.; Palmieri, B. Therapeutical use of probiotic formulations in clinical practice. Clin Nutr. Vol. 29. 2010. p. 701-725.
-Kamada, N.; Nunez, G. Regulation of the immune sys-tem by the resident intestinal bacteria. Gastroenterology. Vol. 146. Num. 6. 2014. p. 1477-88.
-Kau, A. L.; Ahern, P. P.; Griffin, N. W.; Goodman, A. L. Gordon, J. I. Human nutrition, the gut microbiome andthe immune system. Nature. Vol. 474. 2011. p. 327.
-Kmiec, Z.; Cyman, M.; Slebioda, T.J. Cells of the innate and adaptive immunityand their interactions in inflammatory bowel disease. Adv Med Sci Vol. 62. Num. 1. 2017. p. 1-16.
-Koenig, J.E.; Spor, A.; Scalfone, N.; Fricker, A.D.; Stombaugh, J.; Knight, R.; Angenent, L.T.; Ley, R.E. Succession of microbial consortia in the developing infant gut microbiome. Proc Natl Acad Sci U S A. Vol. 108. 2011. Suppl 1. p. 4578-85.
-Kolho, K.L.; Korpela, K.; Jaakkola, T.; Pichai, M.V.; Zoetendal, E.G.; Salonen, A.; De Vos, W.M. Fecal Microbiota in Pediatric Inflammatory Bowel Disease and Its Relation to Inflammation. Am J Gastroenterol. Vol. 110. Num. 6. 2015. p. 921-30.
-Kostic, A.D.; Xavier, R.J.; Gevers, D. The microbiome in inflammatory bowel disease: currentstatus and the future ahead. Gastroenterology. Vol. 146. Num. 6. 2014. p. 1489-99.
-Lee, T.C.; Huang, Y.C.; Lu, Y.Z.; Yeh, Y.C.; Yu, L.C. Hypoxia-induced intestinal barrierchanges in balloon-assisted enteroscopy. J Physiol. Vol. 596. Num. 15. 2017. p. 13.
-Lepage, P.; Leclerc, M.C.; Joossens, M.; Mondot, S.; Blottière, H.M.; Raes, J.; Ehrlich, D.; Doré, J. A metagenomic insight into our gut's microbiome. Gut. Vol. 62. Num. 1. 2013. p.146-158.
-Li, H.; Qi, Y.; Jasper, H. Preventing Age-Related Decline of Gut ompartmentalization Limits Microbiota Dysbiosis and Extends Lifespan. Cell Host Microbe. Vol. 19. 2016. p. 240-53.
-Lin, L.; Zhang, J. Role of intestinal microbiota and metabolites on gut homeostasis and human diseases. BMC Immunology. Vol. 18. Num. 1. 2017. p. 2.
-Losurdo, G.; Iannone, A.; Contaldo, A.; Ierardi, E.; Di Leo, A.; Principi, M. Escherichia coli Nissle 1917 in ulcerative colitis treatment: Systematic review and meta-analysis. J. Gastrointest. Liver Dis. Vol. 24. 2015. p. 499-505.
-Lu, Y.Z.; Huang, C.Y.; Huang, Y.C.; Lee, T.C.; Kuo, W.T.; Pai, Y.C.; Yu, L.C. Tumor Necrosis Factor alpha-Dependent NeutrophilPriming Prevents Intestinal Ischemia/ Reperfusion-Induced Bacterial Translocation. Dig Dis Sci. Vol. 62. Num. 6. 2017. p. 1498-1510.
-Lynch, S.V.; Pedersen, O. The Human Intestinal Microbiome in Health and Disease. N Engl J Med. Vol. 375. Num. 24. 2016. p. 2369-79.
-Machiels, K.; Joossens, M.; Sabino, J.; Preter, V.; Arijs, I.; Eeckhaut, V.; Ballet, V.; Claes, K.; Van Immerseel, F.; Verbeke, K.; Ferrante, M.; Verhaegen, J.;Rutgeerts, P.; Vermeire, S. A decrease of the butyrate-producing species Roseburia hominis and Faecalibacterium prausnitzii defines dysbiosis in patients with ulcerative colitis. Gut Vol. 63. Num. 8. 2014. p. 275-1283.
-Macpherson, A.J.; Yilmaz, B.; Limenitakis, J.P.; Ganal-Vonarburg, S.C. IgA Function in Relation to the Intestinal Microbiota. Annu Rev Immunol. Vol. 36. 2018. p. 359-81.
-Mai, V.; Draganov, P.V. Recent advances and remaining gaps in our knowledge of associations between gut microbiota and human health. World J Gastroenterol Vol. 15. 2009. p. 81-85.
-Malik, T.; Mannon, P. Inflammatory bowel diseases: emerging therapies and promisingmolecular targets. Front Biosci. Vol. 4. 2012. p. 1172-89.
-Martinez-Medina, M.; Garcia-Gil, L.J. Escherichia coli in chronic inflammatory bowel diseases: An update on adherent invasive Escherichia coli pathogenicity. World J Gastrointest Pathophysiol. Vol. 5. Num. 3. 2014. p. 213-227.
-Matsuoka, K.; Kanai, T. The gut microbiota and inflammatory bowel disease. Semin Immunopathol. Vol. 37. Num. 1. 2015. p. 47-55.
-Miyoshi, J.; Chang, E.B. The gut microbiota and inflammatory bowel diseases. Transl Res. Vol. 179. 2017. p. 38-48.
-Nagpal, R.; Yadav, H. Bacterial Translocation from the Gut to the Distant Organs: An Overview. Ann Nutr Metab. Vol. 71. Supp. 1. 2017. p. 11-6.
-Nakamoto, N.; Schnabl, B. Does the Intestinal Microbiota Explain Differences in the Epidemiology of Liver Disease between East and West? Inflamm Intest Dis. Vol. 1. Num.1. 2016. p. 3-8.
-Nishino, K.; Nishida, A.; Inoue, R.; Kawada, Y.; Ohno, M.; Sakai, S.; Inatomi, O.; Bamba, S.; Sugimoto, M.; Kawahara, M.; Naito, Y.; Andoh, A. Analysis of endoscopic brush samples identified mucosa-associated dysbiosis in inflammatory bowel disease. J. Gastroenterol. Vol. 53. Num. 1. 2018.p. 95-106.
-Oliva, S.; Di Nardo, G.; Ferrari, F.; Mallardo, S.; Rossi, P.; Patrizi, G.; Cucchiara, S.; Stronati, L.Randomised clinical trial: The e_ectiveness of Lactobacillus reuteri ATCC 55730 rectal enema in children with active distal ulcerative colitis. Aliment. Pharmacol. Ther. Vol. 35. 2012. p. 327p.334.
-Palmela, C.; Chevarin, C.; Xu, Z.; Torres, J.; Sevrin, G.; Hirten, R.; Barnich, N.; Ng, S.C.; Colombel, J.F. Adherent-invasive Escherichia coli in inflammatory bowel disease. Gut. Vol. 67. 2018. p. 574-587.
-Palmer, D.J.; Metcalfe, J.; Prescott, S.L. Preventing disease in the 21st century: the importance of maternal and early infant diet and nutrition. J Allergy Clin Immunol Vol. 130. Num. 3. 2012. p. 733-734.
-Pascal, V.; Pozuelo, M.; Borruel, N.; Casellas, F.; Campos, D.; Santiago, A.; Martinez, X.; Varela, E.; Sarrabayrouse, G.; Machiels, K.; Vermeire, S.; Sokol, H.; Guarner, F.; Manichanh, C. A microbial signature for Crohn's disease.Gut. Vol. 66. Num. 5. 2017. p. 813-22.
-Pilarczyk-Zurek, M.; Chmielarczyk, A.; Gosiewski, T.; Tomusiak, A.; Adamski, P.; Zwolinska-Wcislo, M.; Mach, T.; Heczko, P.B.; Strus, M. Possible role of Escherichia coli in propagation and perpetuation of chronic inflammation in ulcerative colitis. BMC Gastroenterol. Vol. 13. 2013. p. 61.
-Prorok-Hamon, M.; Friswell, M.K.; Alswied. A.;Roberts, C.L.; Song, F.; Flanagan, P.K.; Knight, P.; Codling, C.; Marchesi, J.R.; Winstanley, C.; Hall, N.; Rhodes, J.M.; Campbell, B.J.Colonic mucosaassociated diffusely adherent afaC+Escherichia coli expressing lpfA and pks are increased in inflammatory bowel disease and colon cancer. Gut.Vol. 63. Num. 5. 2014. p. 761-70.
-Qin, J.; Li, R.; Raes, J.; Arumugam, M.; Burgdorf, K.S.; Manichanh, C.; Nielsen, T.; Pons, N.; Florence Levenez, F.; Yamada, T.; Mende, D.R.; Li, J.; Xu, J.; Li, S.; Li, D.; Cao, J.; Wang, B.; Liang, H.; Zheng, H.; Xie, Y.; Tap, J.; Lepage, P.; Bertalan, M.; Batto, J-M.; Hansen, T.; LePaslier, D.; Linneberg, A.; Nielsen, H.B.; Pelletier, E.; Renault, P.; Sicheritz-Ponten, T.; Turner, K.; Zhu, H.; Yu, C.; LiS.; Jian, M.; Zhou, Y.; Li, Y.; Zhang, X.; Li, S.; Qin, N.; Yang, H.; Wang, J.; Brunak, S.; Dore, J.; Guarner, F.; Kristiansen, K.; Pedersen, O.; Parkhill, J.; Weissenbach, J.C.; Consortium, M.; Bork, P.; Ehrlich, D.; Wang, J.A human gut microbial gene catalogue established by metagenomic sequencing. Nature. Vol. 464. 2010. p. 59-65.
-Quigley, E.M. Gut microbiota and the role of probiotics in therapy. Curr Opin Pharmacol. Vol. 11. 2011. p. 593-603.
-Reis, S.A.; Conceicao, L.L.; Siqueira, N.P.; Rosa, D.D.; Silva, L.L.; Peluzio, M.D. Review of the mechanisms of probiotic actions in the prevention of colorectal cancer. Nutr. Res. Vol. 37. 2017. p. 1-19.
-Reuter, B.K.; Pizarro, T.T. Mechanisms of tight junction dysregulation in the SAMP1/YitFc model of Crohn's disease-like ileitis. Ann N Y Acad Sci. Vol. 1165. 2009. p. 301-7.
-Round, J.L.; Mazmanian, S.K. The gut microbiota shapes intestinal immune responses during health and disease. Nat Rev Immunol. Vol. 9. Num. 5. 2009. p. 313-23.
-Sánchez, B.; Gueimonde, M.; Peña, A.S.; Bernardo, D. Intestinal microbiota as modulators of the immune system. J Immunol Res. Vol. 2015. 2015. p. 1-14.
-Sanders, M.E. Probiotics: definition, sources, selection, and uses. Clin Infect Dis.Vol. 46. Suppl. 2. 2008. p. 58-61.
-Sartor, R.B.; Wu, G.D. Roles for intestinal bacteria, viruses, and fungi in pathogenesis of inflammatory bowel bowel diseases and therapeutic approaches. Gastroenterology. Vol. 152. 2016. p. 327-339.
-Schaubeck, M.; Clavel, T.; Calasan, J.; Lagkouvardos, I.; Haange, S.B.; Jehmlich, N.; Basic, M.; Dupont, A.; Hornef, M.; Von Bergen, M.; Bleich, A.; Haller, D. Dysbiotic gut microbiota causes transmissible Crohn’ s disease-like ileitis independent of failure in antimicrobial defence. Gut. Vol. 65. 2016. p. 225-237.
-Scott, K.P.; Antoine, J.M.; Midtvedt, T.; Van Hemert, S. Manipulating the gut microbiota to maintain health and treat disease. Microbiol Ecol Health Dis. Vol. 26. 2015. p. 26.
-Sender, R.; Fuchs, S.; Milo, R.Revised estimates for the number of human and bacteria cells in the body. PLoS Biol. Vol. 14. Num. 8. 2016. p. 1002533.
-Sender, R.; Fuchs,S.; Milo, R. Are We Really Vastly Outnumbered? Revisiting the Ratio of Bacterial to Host Cells in Humans. Cell. Vol. 164. Num. 3. 2016a. p. 337-40.
-Shaw, K.A.; Bertha,M.; Hofmekler, T.; Chopra, P.; Vatanen, T.; Srivatsa, A.; Prince, J.; Kumar, A.; Sauer, C.; Zwick, M.E.; Satten, G.A.; Kostic, A.D.; Mulle, J.G.; Xavier, R.J.; Kugathasan, S.Dysbiosis, inflammation, and response to treatment: a longitudinal study of pediatric subjects with newly diagnosed inflammatory bowel disease. Genome Med. Vol. 8. Num. 1. 2016. p. 75.
-Shreiner, A.B.; Kao, J.Y.; Young, V.B. The gut microbiome inhealth and in disease. Curr Opin Gastroenterol. Vol. 31. Num. 1. 2015. p. 69.
-Sobieszczanska, B.A.; Duda-Madej, A.B.; Turniak, M.B.; Franiczek, R.; Kasprzykowska, U.; Duda, A.K.; Rzeszutko, M.; Iwańczak B. Invasive properties, adhesion patterns and phylogroup profiles among Escherichia coli strains isolated from children with inflammatory bowel disease. Adv Clin Exp Med. Vol. 21. 2012. p. 591-9.
-Sokol, H.; Seksik, P.; Furet, J.P.; Firmesse, O.; Nion-Larmurier, I.; Beaugerie, L.; Cosnes, J.; Corthier, G.; Marteau, P.; Doré, J. Low counts of Faecalibacterium prausnitzii in colitis microbiota. Inflamm Bowel Dis. Vol. 15. 2009. p. 1183-9.
-Tannock, G.W. The bowel microbiota and inflammatory bowel diseases. Int J Inflam. Vol. 2010. 2010. p. 1-9.
-Thaiss, C.A.; Zmora, N.; Levy, M.; Elinav, E. The microbiome and innate immunity. Nature. Vol. 535. 2016. p. 65-74.
-Theriot, C.M.; Young, V.B. Interactions between the gastrointestinal microbiome and Clostridium difficile. Annu Rev Microbiol. Vol. 69. 2015. p. 445-61.
-Tuohy, K.; Del Rio, D. eds. Diet-microbe interactions in the gut. Effects on human health and disease. Elsevier Science Publishing Co. Inc. San Diego. CA. EUA. 2014. p. 1-15.
-Turnbaugh, P.J.; Ley, R.E.; Hamady, M.; Fraser-Liggett, C.M.; Knight, R.; Gordon, J.I. The human microbiome project. Nature. Vol. 449. Num. 7164. 2007. p. 804.10.
-Walker, A.W.; Sanderson, J.D.; Churcher, C.; Parkes, G.C.; Hudspith, B.N.; Rayment, N.; Brostoff, J.; Parkhill, J.; Dougan, G.; Petrovska, L. High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease. BMC Microbiol. Vol. 11. Num. 7. 2011.
-Willing, B.P.; Dicksved, J.; Halfvarson, J.; Andersson, A.F.; Lucio, M.; Zheng, Z.; Järnerot, G.; Tysk, C.; Jansson, J.K.; Engstrand, L. A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes. Gastroenterology. Vol. 139. 2010. p. 1844-1854.
-Yu, L.C.; Wang, J.T.; Wei, S.C.; Ni, Y.H. Host-microbial interactions and regulation of intestinal epithelial barrier function: From physiology to pathology. World J Gastrointest Pathophysiol. Vol. 3. Num. 1. 2012. p. 27-34.
-Yu, L.C.; Wei, S.C.; Ni, Y.N. Interplay between the gut microbiota and epitelial innate signaling in colitis-associated colon carcinogenesis. Cancer Res Frontiers. Vol. 3. Num. 1. 2017. p. 1-28.
-Zuo, T.; Kamm, M.A.; Colombel, J.F.; Ng, S.C. Urbanization and the gut microbiota in health and inflammatory bowel disease. Gastroenterology & Hepatology. Vol. 15. Num. 7. 2018. p. 440-452.
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